WAD.matrix

WAD.matrix.generate_matrix(bed_file: str, bigwig_files: list, temp_file: str)

generate matrix using peak regions from a BED file and signal values from bigWig files.

Parameters:

• bed_file (str) – Path to BED file containing peak regions. Must be tab-delimited with columns: Chromosome, Start, End (no header).

• bigwig_files (list of str) – List of bigwig file paths representing different cell types.

• temp_file (str) – Path to the output TSV file that will store the resulting matrix.

Returns:

The function writes the resulting matrix to temp_file.

Return type:

None