Index

C

chrom_solution_to_bed() (in module WAD.rocco), [1]

compute_proportions() (in module WAD.linear_programming), [1] concat_chromosome_parquets_for_celltype() (in module WAD.io), [1]

D

denoise_dwt() (in module WAD.wavelet), [1]

G

generate_matrix() (in module WAD.matrix), [1]

group_samples() (in module WAD.io), [1]

L

load_celltype_parquets_for_chrom() (in module WAD.io), [1]

load_chrom_sizes() (in module WAD.io), [1] load_matrix() (in module WAD.io), [1]

M

merge_bed_files() (in module WAD.rocco), [1] merge_by_celltype() (in module WAD.processing), [1] merge_intervals_for_chromosome() (in module WAD.rocco), [1] module WAD.io, [1] WAD.linear_programming, [1] WAD.matrix, [1] WAD.processing, [1] WAD.rocco, [1] WAD.wavelet, [1]

P

process_all_samples() (in module WAD.processing), [1]

process_one_chrom() (in module WAD.processing), [1] process_rocco() (in module WAD.processing), [1]

R

read_bigWig() (in module WAD.io), [1]

rocco_one_chrom() (in module WAD.rocco), [1]

S

save_deconvolution_results() (in module WAD.io), [1]

solve_deconvolution() (in module WAD.linear_programming), [1]

W

WAD.io module, [1] WAD.linear_programming module, [1] WAD.matrix module, [1]

WAD.processing module, [1] WAD.rocco module, [1] WAD.wavelet module, [1] write_bigWig() (in module WAD.io), [1]